Examinando por Autor "Soto-Azat, C."
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Ítem Development and worldwide use of non-lethal, and minimal population-level impact, protocols for the isolation of amphibian chytrid fungi(Nature Publishing Group, 2018-12) Fisher, M.C.; Ghosh, P.; Shelton, J.M.G.; Bates, K.; Brookes, L.; Wierzbicki, C.; Rosa, G.M.; Farrer, R.A.; Aanensen, D.M.; Alvarado-Rybak, M.; Bataille, A.; Berger, L.; Böll, S.; Bosch, J.; Clare, F.C.; Courtois, E.A.; Crottini, A.; Cunningham, A.A.; Doherty-Bone, T.M.; Gebresenbet, F.; Gower, D.J.; Höglund, J.; James, T.Y.; Jenkinson, T.S.; Kosch, T.A.; Lambertini, C.; Laurila, A.; Lin, C.-F.; Loyau, A.; Martel, A.; Meurling, S.; Miaud, C.; Minting, P.; Ndriantsoa, S.; O'Hanlon, S.J.; Pasmans, F.; Rakotonanahary, T.; Rabemananjara, F.C.E.; Ribeiro, L.P.; Schmeller, D.S.; Schmidt, B.R.; Skerratt, L.; Smith, F.; Soto-Azat, C.; Tessa, G.; Toledo, L.F.; Valenzuela-Sánchez, A.; Verster, R.; Vörös, J.; Waldman, B.; Webb, R.J.; Weldon, C.; Wombwell, E.; Zamudio, K.R.; Longcore, J.E.; Garner, T.W.J.Parasitic chytrid fungi have emerged as a significant threat to amphibian species worldwide, necessitating the development of techniques to isolate these pathogens into culture for research purposes. However, early methods of isolating chytrids from their hosts relied on killing amphibians. We modified a pre-existing protocol for isolating chytrids from infected animals to use toe clips and biopsies from toe webbing rather than euthanizing hosts, and distributed the protocol to researchers as part of the BiodivERsA project RACE; here called the RML protocol. In tandem, we developed a lethal procedure for isolating chytrids from tadpole mouthparts. Reviewing a database of use a decade after their inception, we find that these methods have been applied across 5 continents, 23 countries and in 62 amphibian species. Isolation of chytrids by the non-lethal RML protocol occured in 18% of attempts with 207 fungal isolates and three species of chytrid being recovered. Isolation of chytrids from tadpoles occured in 43% of attempts with 334 fungal isolates of one species (Batrachochytrium dendrobatidis) being recovered. Together, these methods have resulted in a significant reduction and refinement of our use of threatened amphibian species and have improved our ability to work with this group of emerging pathogens. © 2018 The Author(s).Ítem Dispersal and extrapolation on the accuracy of temporal predictions from distribution models for the Darwin's frog(Ecological Society of America, 2017-07) Uribe-Rivera, D.E.; Soto-Azat, C.; Valenzuela-Sánchez, A.; Bizama, G.; Simonetti, J.A.; Pliscoff, P.Climate change is a major threat to biodiversity; the development of models that reliably predict its effects on species distributions is a priority for conservation biogeography. Two of the main issues for accurate temporal predictions from Species Distribution Models (SDM) are model extrapolation and unrealistic dispersal scenarios. We assessed the consequences of these issues on the accuracy of climate-driven SDM predictions for the dispersal-limited Darwin's frog Rhinoderma darwinii in South America. We calibrated models using historical data (1950-1975) and projected them across 40 yr to predict distribution under current climatic conditions, assessing predictive accuracy through the area under the ROC curve (AUC) and True Skill Statistics (TSS), contrasting binary model predictions against temporal-independent validation data set (i.e., current presences/absences). To assess the effects of incorporating dispersal processes we compared the predictive accuracy of dispersal constrained models with no dispersal limited SDMs; and to assess the effects of model extrapolation on the predictive accuracy of SDMs, we compared this between extrapolated and no extrapolated areas. The incorporation of dispersal processes enhanced predictive accuracy, mainly due to a decrease in the false presence rate of model predictions, which is consistent with discrimination of suitable but inaccessible habitat. This also had consequences on range size changes over time, which is the most used proxy for extinction risk from climate change. The area of current climatic conditions that was absent in the baseline conditions (i.e., extrapolated areas) represents 39% of the study area, leading to a significant decrease in predictive accuracy of model predictions for those areas. Our results highlight (1) incorporating dispersal processes can improve predictive accuracy of temporal transference of SDMs and reduce uncertainties of extinction risk assessments from global change; (2) as geographical areas subjected to novel climates are expected to arise, they must be reported as they show less accurate predictions under future climate scenarios. Consequently, environmental extrapolation and dispersal processes should be explicitly incorporated to report and reduce uncertainties in temporal predictions of SDMs, respectively. Doing so, we expect to improve the reliability of the information we provide for conservation decision makers under future climate change scenarios.Ítem Is chytridiomycosis driving darwin's frogs to extinction?(Public Library of Science, 2013-11) Soto-Azat, C.; Valenzuela-Sánchez, A.; Clarke, B.; Busse, K.; Ortiz, J.; Barrientos, C.; Cunningham, A.Darwin's frogs (Rhinoderma darwinii and R. rufum) are two species of mouth brooding frogs from Chile and Argentina that have experienced marked population declines. Rhinoderma rufum has not been found in the wild since 1980. We investigated historical and current evidence of Batrachochytrium dendrobatidis (Bd) infection in Rhinoderma spp. to determine whether chytridiomycosis is implicated in the population declines of these species. Archived and live specimens of Rhinoderma spp., sympatric amphibians and amphibians at sites where Rhinoderma sp. had recently gone extinct were examined for Bd infection using quantitative real-time PCR. Six (0.9%) of 662 archived anurans tested positive for Bd (4/289 R. darwinii; 1/266 R. rufum and 1/107 other anurans), all of which had been collected between 1970 and 1978. An overall Bd-infection prevalence of 12.5% was obtained from 797 swabs taken from 369 extant individuals of R. darwinii and 428 individuals representing 18 other species of anurans found at sites with current and recent presence of the two Rhinoderma species. In extant R. darwinii, Bd-infection prevalence (1.9%) was significantly lower than that found in other anurans (7.3%). The prevalence of infection (30%) in other amphibian species was significantly higher in sites where either Rhinoderma spp. had become extinct or was experiencing severe population declines than in sites where there had been no apparent decline (3.0%; x2 = 106.407, P<0.001). This is the first report of widespread Bd presence in Chile and our results are consistent with Rhinoderma spp. declines being due to Bd infection, although additional field and laboratory investigations are required to investigate this further.Ítem The Population Decline and Extinction of Darwin's Frogs(Public Library of Science, 2013-06) Soto-Azat, C.; Valenzuela-Sánche, A.; Collen, B.; Rowcliffe, M.; Veloso, A.; Cunningham, A.Darwin's frogs (Rhinoderma darwinii and R. rufum) are two species of mouth-brooding frogs from Chile and Argentina. Here, we present evidence on the extent of declines, current distribution and conservation status of Rhinoderma spp.; including information on abundance, habitat and threats to extant Darwin's frog populations. All known archived Rhinoderma specimens were examined in museums in North America, Europe and South America. Extensive surveys were carried out throughout the historical ranges of R. rufum and R. darwinii from 2008 to 2012. Literature review and location data of 2,244 archived specimens were used to develop historical distribution maps for Rhinoderma spp. Based on records of sightings, optimal linear estimation was used to estimate whether R. rufum can be considered extinct. No extant R. rufum was found and our modelling inferred that this species became extinct in 1982 (95% CI, 1980-2000). Rhinoderma darwinii was found in 36 sites. All populations were within native forest and abundance was highest in Chiloé Island, when compared with Coast, Andes and South populations. Estimated population size and density (five populations) averaged 33.2 frogs/population (range, 10.2-56.3) and 14.9 frogs/100 m2 (range, 5.3-74.1), respectively. Our results provide further evidence that R. rufum is extinct and indicate that R. darwinii has declined to a much greater degree than previously recognised. Although this species can still be found across a large part of its historical range, remaining populations are small and severely fragmented. Conservation efforts for R. darwinii should be stepped up and the species re-classified as Endangered.Ítem Trophic ecology of the Endangered Darwin's frog inferred by stable isotopes(Inter-Research, 2018) Molina-Burgos, B.E.; Valenzuela-Sánchez, A.; Alvarado-Rybak, M.; Klarian, S.; Soto-Azat, C.Darwin's frogs Rhinoderma spp. are the only known mouth-brooding frogs on Earth. The southern Darwin's frog, R. darwinii, is found in the temperate forests of southern South America, is listed as Endangered and could be the only extant representative of this genus. Based on stomach contents, invertebrate prey availability and stable isotope analysis, we determined for the first time trophic ecological parameters for this species. Our results showed that R. darwinii is a generalist sit-and-wait predator and a secondary consumer, with a trophic position of 2.9. Carbon and nitrogen isotope composition indicated that herbivore invertebrates are their main prey, detected in 68.1% of their assimilated food. The most consumed prey included mosquitoes, flies, crickets, grasshoppers and ants. Detritivore and carnivore invertebrates were also ingested, but in lower proportions. Our results contribute to a better understanding of the feeding habits of this fully terrestrial amphibian and provide the first insight into their role linking low forest trophic positions with intermediate predators. We provide valuable biological information for in situ and ex situ conservation which can be used when developing habitat protection, reintroduction and captive breeding programmes. As revealed here, stable isotope analysis is a valuable tool to study the trophic ecology of highly endangered and cryptic species. © The authors 2018.