Genomic diversity of listeria monocytogenes isolated from clinical and non-clinical samples in Chile

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dc.contributor.authorToledo, V.
dc.contributor.authorDen Bakker, H.C.
dc.contributor.authorHormazábal, J.C.
dc.contributor.authorGonzález-Rocha, G.
dc.contributor.authorBello-Toledo, H.
dc.contributor.authorToro, M.
dc.contributor.authorMoreno-Switt, A.I.
dc.date.accessioned2019-11-28T15:17:20Z
dc.date.available2019-11-28T15:17:20Z
dc.date.issued2018-08
dc.descriptionIndexación: Scopus.es
dc.descriptionFunding: The study was funded by the Universidad Andres Bello Grant no. DI-638-15/I to V.T.
dc.description.abstractListeria monocytogenes is the causative agent of listeriosis, which is an uncommon but severe infection associated with high mortality rates in humans especially in high-risk groups. This bacterium survives a variety of stress conditions (e.g., high osmolality, low pH), which allows it to colonize different niches especially niches found in food processing environments. Additionally, a considerable heterogeneity in pathogenic potential has been observed in different strains. In this study, 38 isolates of L. monocytogenes collected in Chile from clinical samples (n = 22) and non-clinical samples (n = 16) were analyzed using whole genome sequencing (WGS) to determine their genomic diversity. A core genome Single Nucleotide Polymorphism (SNP) tree using 55 additional L. monocytogenes accessions classified the Chilean isolates in lineages I (n = 25) and II (n = 13). In silico, Multi-locus sequence typing (MLST) differentiated the isolates into 13 sequence types (ST) in which the most common were ST1 (15 isolates) and ST9 (6 isolates) and represented 55% of the isolates. Genomic elements associated with virulence (i.e., LIPI-1, LIPI-3, inlA, inlB, inlC, inlG, inlH, inlD, inlE, inlK, inlF, and inlJ) and stress survival (i.e., stress survival islet 1 and stress survival islet 2) were unevenly distributed among clinical and non-clinical isolates. In addition, one novel inlA premature stop codon (PMSC) was detected. Comparative analysis of L. monocytogenes circulating in Chile revealed the presence of globally distributed sequence types along with differences among the isolates analyzed at a genomic level specifically associated with virulence and stress survival. © 2018 by the authors. Licensee MDPI, Basel, Switzerland.es
dc.description.urihttps://www.mdpi.com/2073-4425/9/8/396
dc.identifier.citationGenes, 9(8), art. no. 396.es
dc.identifier.issn2073-4425
dc.identifier.otherDOI: 10.3390/genes9080396
dc.identifier.urihttp://repositorio.unab.cl/xmlui/handle/ria/10887
dc.language.isoenes
dc.publisherMDPI AGes
dc.subjectChilees
dc.subjectGenomic diversityes
dc.subjectListeria monocytogeneses
dc.subjectSingle nucleotide polymorphismes
dc.subjectWhole genome sequencinges
dc.titleGenomic diversity of listeria monocytogenes isolated from clinical and non-clinical samples in Chilees
dc.typeArtículoes
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