De novo assembly and analysis of tissue-specific transcriptomes of the edible red sea urchin loxechinus albus using rna-seq

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dc.contributor.authorAntiqueo, Paulette
dc.contributor.authorZuloaga, Rodrigo
dc.contributor.authorBastias-Molina, Macarena
dc.contributor.authorMeneses, Claudio
dc.contributor.authorEstrada, Juan Manuel
dc.contributor.authorMolina, Alfredo
dc.contributor.authorValdés, Juan Antonio
dc.date.accessioned2023-10-17T22:48:29Z
dc.date.available2023-10-17T22:48:29Z
dc.date.issued2021-09
dc.descriptionIndexación: Scopuses
dc.description.abstractEdible red sea urchin (Loxechinus albus) is an endemic echinoderm species of the Chilean coasts. The worldwide demand for high-quality gonads of this species has addressed the depletion of its natural populations. Studies on this sea urchin are limited, and genomic information is almost nonexistent. Hence, generate a transcriptome is crucial information that will considerably enrich molecular data and promote future findings for the L. albus aquaculture. Here, we obtained transcriptomic data of the edible red sea urchin by Illumina platform. Total RNA was extracted from gonads, intestines, and coelomocytes of juvenile urchins, and samples were sequenced using MiSeq Illumina technology. A total of 91,119,300 paired-end reads were de novo assembled, 185,239 transcripts produced, and a reference transcriptome created with 38.8% GC content and an N50 of 1769 bp. Gene ontology analysis revealed notable differences in the expression profiles between gonads, intestines, and coelomocytes, allowing the detection of transcripts associated with specific biological processes and KEGG pathways. These data were validated using 12 candidate transcripts by real-time qPCR. This dataset will provide a valuable molecular resource for L. albus and other species of sea urchins. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.es
dc.description.urihttps://www.mdpi.com/2079-7737/10/10/995
dc.identifier.citationBiology Open Access Volume 10, Issue 10September 2021 Article number 995es
dc.identifier.doi10.3390/biology10100995
dc.identifier.issn2079-7737
dc.identifier.urihttps://repositorio.unab.cl/xmlui/handle/ria/53486
dc.language.isoenes
dc.publisherMDPIes
dc.rights.licenseAtribución 4.0 Internacional (CC BY 4.0)
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/deed.es
dc.subjectEdible red sea urchines
dc.subjectLoxechinus albuses
dc.subjectReference transcriptomees
dc.subjectRNA-seqes
dc.titleDe novo assembly and analysis of tissue-specific transcriptomes of the edible red sea urchin loxechinus albus using rna-seqes
dc.typeArtículoes
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