JUICE: A data management system that facilitates the analysis of large volumes of information in an EST project workflow

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dc.contributor.authorLatorre, M.
dc.contributor.authorSilva, H.
dc.contributor.authorSaba, J.
dc.contributor.authorGuziolowski, C.
dc.contributor.authorVizoso, P.
dc.contributor.authorMartinez, V.
dc.contributor.authorMaldonado, J.
dc.contributor.authorMorales, A.
dc.contributor.authorCaroca, R.
dc.contributor.authorCambiazo, V.
dc.contributor.authorCampos-Vargas, R.
dc.contributor.authorGonzalez, M.
dc.contributor.authorOrellana, A.
dc.contributor.authorRetamales, J.
dc.contributor.authorMeisel, L.
dc.date.accessioned2023-03-16T13:45:09Z
dc.date.available2023-03-16T13:45:09Z
dc.date.issued2006-11
dc.descriptionIndexación: Scopus.
dc.description.abstractBackground: Expressed sequence tag (EST) analyses provide a rapid and economical means to identify candidate genes that may be involved in a particular biological process. These ESTs are useful in many Functional Genomics studies. However, the large quantity and complexity of the data generated during an EST sequencing project can make the analysis of this information a daunting task. Results: In an attempt to make this task friendlier, we have developed JUICE, an open source data management system (Apache + PHP + MySQL on Linux), which enables the user to easily upload, organize, visualize and search the different types of data generated in an EST project pipeline. In contrast to other systems, the JUICE data management system allows a branched pipeline to be established, modified and expanded, during the course of an EST project. The web interfaces and tools in JUICE enable the users to visualize the information in a graphical, user-friendly manner. The user may browse or search for sequences and/or sequence information within all the branches of the pipeline. The user can search using terms associated with the sequence name, annotation or other characteristics stored in JUICE and associated with sequences or sequence groups. Groups of sequences can be created by the user, stored in a clipboard and/or downloaded for further analyses. Different user profiles restrict the access of each user depending upon their role in the project. The user may have access exclusively to visualize sequence information, access to annotate sequences and sequence information, or administrative access. Conclusion: JUICE is an open source data management system that has been developed to aid users in organizing and analyzing the large amount of data generated in an EST Project workflow. JUICE has been used in one of the first functional genomics projects in Chile, entitled "Functional Genomics in nectarines: Platform to potentiate the competitiveness of Chile in fruit exportation". However, due to its ability to organize and visualize data from external pipelines, JUICE is a flexible data management system that should be useful for other EST/ Genome projects.es
dc.description.urihttps://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-7-513
dc.identifier.citationBMC Bioinformatics, Volume 723, November 2006, Article number 513es
dc.identifier.doi10.1186/1471-2105-7-513
dc.identifier.issn1471-2105
dc.identifier.urihttps://repositorio.unab.cl/xmlui/handle/ria/47525
dc.language.isoenes
dc.publisherBMCes
dc.rights.licenseAttribution 2.0 Generic (CC BY 2.0)
dc.rights.urihttps://bmcbioinformatics.biomedcentral.com/about/#open+access
dc.subjectBioinformaticses
dc.subjectExpressed Sequence Tagses
dc.subjectBiotic Stresses
dc.subjectChromatographyes
dc.subjectComputational Biologyes
dc.subjectDatabase Management Systemses
dc.subjectDatabaseses
dc.subjectGenetices
dc.subjectDatabaseses
dc.subjectNucleic Acides
dc.titleJUICE: A data management system that facilitates the analysis of large volumes of information in an EST project workflowes
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