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Characterization of High-Risk HPV/EBV Co-Presence in Pre-Malignant Cervical Lesions and Squamous Cell Carcinomas
(MDPI, 2022-04) Blanco, Rancés; Carrillo Beltrán, Diego; Muñoz, Juan P.; Osorio, Julio C.; Tapia, Julio C.; Burzio, Verónica A.; Gallegos, Iván; Calaf, Gloria M.; Chabay, Paola; Aguayo, Francisco
High-risk human papillomaviruses (HR-HPVs) are the etiological agents of cervical cancer. However, a low proportion of HR-HPV-infected women finally develop this cancer, which suggests the involvement of additional cofactors. Epstein–Barr virus (EBV) has been detected in cervical squamous cell carcinomas (SCCs) as well as in low-(LSIL) and high-grade (HSIL) squamous in-traepithelial lesions, although its role is unknown. In this study, we characterized HR-HPV/EBV co-presence and viral gene expression in LSIL (n = 22), HSIL (n = 52), and SCC (n = 19) from Chilean women. Additionally, phenotypic changes were evaluated in cervical cancer cells ectopically expressing BamHI-A Rightward Frame 1 (BARF1). BARF1 is a lytic gene also expressed in EBV-positive epithelial tumors during the EBV latency program. HPV was detected in 6/22 (27.3%) LSIL, 38/52 (73.1%) HSIL, and 15/19 (78.9%) SCC cases (p < 0.001). On the other hand, EBV was detected in 16/22 (72.7%) LSIL, 27/52 (51.9%) HSIL, and 13/19 (68.4%) SCC cases (p = 0.177). HR-HPV/EBV co-presence was detected in 3/22 (13.6%) LSIL, 17/52 (32.7%) HSIL, and 11/19 (57.9%) SCC cases (p = 0.020). Additionally, BARF1 transcripts were detected in 37/55 (67.3%) of EBV positive cases and in 19/30 (63.3%) of HR-HPV/EBV positive cases. Increased proliferation, migration, and epithelial-mesenchymal transition (EMT) was observed in cervical cancer cells expressing BARF1. Thus, both EBV and BARF1 transcripts are detected in low-and high-grade cervical lesions as well as in cervical carcinomas. In addition, BARF1 can modulate the tumor behavior in cervical cancer cells, suggesting a role in increasing tumor aggressiveness. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.
Chromosome-Level Genome Assembly of the Blue Mussel Mytilus chilensis Reveals Molecular Signatures Facing the Marine Environment
(Multidisciplinary Digital Publishing Institute (MDPI), 2023-04) Gallardo-Escárate, Cristian; Valenzuela-Muñoz, Valentina; Nuñez-Acuña, Gustavo; Valenzuela-Miranda, Diego; Tapia, Fabian J.; Yévenes, Marco; Gajardo, Gonzalo; Toro, Jorge E.; Oyarzún, Pablo A.; Arriagada, Gloria; Novoa, Beatriz; Figueras, Antonio; Roberts, Steven; Gerdol, Marco
The blue mussel Mytilus chilensis is an endemic and key socioeconomic species inhabiting the southern coast of Chile. This bivalve species supports a booming aquaculture industry, which entirely relies on artificially collected seeds from natural beds that are translocated to diverse physical–chemical ocean farming conditions. Furthermore, mussel production is threatened by a broad range of microorganisms, pollution, and environmental stressors that eventually impact its survival and growth. Herein, understanding the genomic basis of the local adaption is pivotal to developing sustainable shellfish aquaculture. We present a high-quality reference genome of M. chilensis, which is the first chromosome-level genome for a Mytilidae member in South America. The assembled genome size was 1.93 Gb, with a contig N50 of 134 Mb. Through Hi-C proximity ligation, 11,868 contigs were clustered, ordered, and assembled into 14 chromosomes in congruence with the karyological evidence. The M. chilensis genome comprises 34,530 genes and 4795 non-coding RNAs. A total of 57% of the genome contains repetitive sequences with predominancy of LTR-retrotransposons and unknown elements. Comparative genome analysis of M. chilensis and M. coruscus was conducted, revealing genic rearrangements distributed into the whole genome. Notably, transposable Steamer-like elements associated with horizontal transmissible cancer were explored in reference genomes, suggesting putative relationships at the chromosome level in Bivalvia. Genome expression analysis was also conducted, showing putative genomic differences between two ecologically different mussel populations. The evidence suggests that local genome adaptation and physiological plasticity can be analyzed to develop sustainable mussel production. The genome of M. chilensis provides pivotal molecular knowledge for the Mytilus complex. © 2023 by the authors.
Clique immersions and independence number
(Academic Press, 2022-12) Bustamante, Sebastián; Quiroz, Daniel A.; Stein, Maya; Zamora, José
The analogue of Hadwiger's conjecture for the immersion order states that every graph G contains Kχ(G) as an immersion. If true, this would imply that every graph with n vertices and independence number α contains K⌈[Formula presented]⌉ as an immersion. The best currently known bound for this conjecture is due to Gauthier, Le and Wollan, who recently proved that every graph G contains an immersion of a clique on ⌈[Formula presented]⌉ vertices. Their result implies that every n-vertex graph with independence number α contains an immersion of a clique on ⌈[Formula presented]−1.13⌉ vertices. We improve on this result for all α≥3, by showing that every n-vertex graph with independence number α≥3 contains an immersion of a clique on ⌊[Formula presented]⌋−1 vertices, where f is a nonnegative function. © 2022
Differential Detection of Amyloid Aggregates in Old Animals Using Gold Nanorods by Computerized Tomography: A Pharmacokinetic and Bioaccumulation Study
(Dove Medical Press Ltd, 2023) Jara-Guajardo, Pedro; ccccccMorales-Zavala, Francisco; Morales-Zavala, Francisco; Giralt, Ernest; Araya, Eyleen; Acosta, Gerardo A.; Albericio, Fernando; Alvarez, Alejandra R.; Kogan, Marcelo J.
Introduction: The development of new materials and tools for radiology is key to the implementation of this diagnostic technique in clinics. In this work, we evaluated the differential accumulation of peptide-functionalized GNRs in a transgenic animal model (APPswe/PSENd1E9) of Alzheimer’s disease (AD) by computed tomography (CT) and measured the pharmacokinetic parameters and bioaccumulation of the nanosystem. Methods: The GNRs were functionalized with two peptides, Ang2 and D1, which conferred on them the properties of crossing the blood-brain barrier and binding to amyloid aggregates, respectively, thus making them a diagnostic tool with great potential for AD. The nanosystem was administered intravenously in APPswe/PSEN1dE9 model mice of 4-, 8-and 18-months of age, and the accumulation of gold nanoparticles was observed by computed tomography (CT). The gold accumulation and biodistribution were determined by atomic absorption. Results: Our findings indicated that 18-month-old animals treated with our nanosystem (GNR-D1/Ang2) displayed noticeable differences in CT signals compared to those treated with a control nanosystem (GNR-Ang2). However, no such distinctions were observed in younger animals. This suggests that our nanosystem holds the potential to effectively detect AD pathology. Discussion: These results support the future development of gold nanoparticle-based technology as a more effective and accessible alternative for the diagnosis of AD and represent a significant advance in the development of gold nanoparticle applications in disease diagnosis. © 2023 Jara-Guajardo et al. This work is published and licensed by Dove Medical Press Limited.
Draft Genome Sequence of Pseudomonas sp. Strain RGM 3321, a Phyllosphere Endophyte from Fragaria chiloensis subsp. chiloensis f. patagonica
(American Society for Microbiology, 2022-07) Castro, Jean Franco; Guerra, Matías; Carrasco Fernández, Jorge; Ortiz Campos, Javiera; Cares Gatica, Diego; Campos Quiroz, Carolina; Correa, Francisco; Beltrán, M. Francisca; Sagredo, Boris; Valdés, Jorge H.
Pseudomonas sp. strain RGM 3321 is a phyllosphere endophyte from Fragaria chiloensis subsp. chiloensis f. patagonica that harbors genes associated with plant growth promotion pathways, as well as genes typically found in plant pathogens. © 2022 Castro et al.
Effects on Quality of Life of a Telemonitoring Platform amongst Patients with Cancer (EQUALITE): A Randomized Trial Protocol
(Multidisciplinary Digital Publishing Institute (MDPI), 2024-04) Martínez, Felipe; Taramasco, Carla; Espinoza, Manuel; Acevedo, Johanna; Goic, Carolina; Nervi, Bruno
Cancer, a pervasive global health challenge, necessitates chemotherapy or radiotherapy treatments for many prevalent forms. However, traditional follow-up approaches encounter limitations, exacerbated by the recent COVID-19 pandemic. Consequently, telemonitoring has emerged as a promising solution, although its clinical implementation lacks comprehensive evidence. This report depicts the methodology of a randomized trial which aims to investigate whether leveraging a smartphone app called Contigo for disease monitoring enhances self-reported quality of life among patients with various solid cancers compared to standard care. Secondary objectives encompass evaluating the app’s impact on depressive symptoms and assessing adherence to in-person appointments. Randomization will be performed independently using an allocation sequence that will be kept concealed from clinical investigators. Contigo offers two primary functions: monitoring cancer patients’ progress and providing educational content to assist patients in managing common clinical situations related to their disease. The study will assess outcomes such as quality of life changes and depressive symptom development using validated scales, and adherence to in-person appointments. Specific scales include the EuroQol Group’s EQ-5D questionnaire and the Patient Health Questionnaire (PHQ-9). We hypothesize that the use of Contigo will assist and empower patients receiving cancer treatment, which will translate to better quality of life scores and a reduced incidence of depressive symptoms. All analyses will be undertaken with the intention-to-treat principle by a statistician unaware of treatment allocation. This trial is registered in ClinicalTrials under the registration number NCT06086990. © 2024 by the authors.
Extra-tidal star candidates in globular clusters of the sagittarius dwarf spheroidal galaxy
(EDP Sciences, 2022-09) Kundu, Richa; Navarrete, Camila; Sbordone, Luca; Carballo-Bello, Julio A.; Fernández-Trincado, José G.; Minniti, Dante; Singh, Harinder P.
Context. Globular clusters (GCs) associated with the Sagittarius dwarf spheroidal galaxy (Sgr dSph) have evolved under the gravita tional potential of both Sgr dSph and the Milky Way. The effects of these potentials are most pronounced in the extra-tidal regions as compared to the central regions of the GCs. Aims. We aim to study the extra-tidal regions of the GCs that are possibly associated with Sgr dSph, namely Arp 2, Terzan 8, NGC 5634, NGC 6284, Terzan 7, NGC 2419, NGC 4147, M 54 and Pal 12, using data from the Gaia early data release 3. Methods. We selected the extra-tidal candidates based on their angular distances from the cluster centre in the RA-Dec plane, proper motions of the clusters and the individual extra-tidal star candidates, and their positions on the colour-magnitude diagrams of the clusters. Results. We found extra-tidal candidates for the nine studied GCs. For eight of them, the surface density of candidate extra-tidal stars in the vicinity of the clusters is in significant excess with respect to more distant surrounding fields. No extended extra-tidal features beyond 5 tidal radii were detected for any of the clusters. Conclusions. We publish a list of the most probable extra-tidal candidates that we determined using Gaia astrometric and photometric data. Our analysis shows that the clusters that are associated with Sgr dSph are more likely affected by the gravitational potential of the Sgr, as the distribution of extra-tidal stars is elongated in the same direction as the local stream. NGC 4147 is the only exception. We found some high-probability candidate extra-tidal stars in several of the analysed clusters. We failed to detect any coherent large-scale tidal tail around them
Galactic ArchaeoLogIcaL ExcavatiOns (GALILEO): I. An updated census of APOGEE N-rich giants across the Milky Way
(EDP Sciences, 2022-07-01) Fernández Trincado, José G.; Beers, Timothy C.; Barbuy, Beatriz; Minniti, Dante; Chiappini, Cristina; Garro, Elisa R.; Tang, Baitian; Alves Brito, Alan; Villanova, Sandro; Geisler, Doug; Lane, Richard R.; Diaz, Danilo G.
We use the 17th data release of the second phase of the Apache Point Observatory Galactic Evolution Experiment (APOGEE-2) to provide a homogenous census of N-rich red giant stars across the Milky Way (MW). We report a total of 149 newly identified N-rich field giants toward the bulge, metal-poor disk, and halo of our Galaxy. They exhibit significant enrichment in their nitrogen abundance ratios ([N/Fe]³a+0.5), along with simultaneous depletions in their [C/Fe] abundance ratios ([C/Fe]< +0.15), and they cover a wide range of metallicities (1.8< [Fe/H]< 0.7). The final sample of candidate N-rich red giant stars with globular-cluster-like (GC-like) abundance patterns from the APOGEE survey includes a grand total of 412 unique objects. These strongly N-enhanced stars are speculated to have been stripped from GCs based on their chemical similarities with these systems. Even though we have not found any strong evidence for binary companions or signatures of pulsating variability yet, we cannot rule out the possibility that some of these objects were members of binary systems in the past and/or are currently part of a variable system. In particular, the fact that we identify such stars among the field stars in our Galaxy provides strong evidence that the nucleosynthetic process(es) producing the anomalous [N/Fe] abundance ratios occurs over a wide range of metallicities. This may provide evidence either for or against the uniqueness of the progenitor stars to GCs and/or the existence of chemical anomalies associated with likely tidally shredded clusters in massive dwarf galaxies such as Kraken/Koala, Gaia-Enceladus-Sausage, among others, before or during their accretion by the MW. A dynamical analysis reveals that the newly identified N-rich stars exhibit a wide range of dynamical characteristics throughout the MW, indicating that they were produced in a variety of Galactic environments. ©
H3K9 Methyltransferases Suv39h1 and Suv39h2 Control the Differentiation of Neural Progenitor Cells in the Adult Hippocampus
(Frontiers Media S.A., 2022-01) Guerra, M.; Cáceres, M.; Herrera-Soto, A.; Arredondo, S.; Varas-Godoy, M.; van Zundert, B.; Varela-Nallar, L.
In the dentate gyrus of the adult hippocampus new neurons are generated from neural precursor cells through different stages including proliferation and differentiation of neural progenitor cells and maturation of newborn neurons. These stages are controlled by the expression of specific transcription factors and epigenetic mechanisms, which together orchestrate the progression of the neurogenic process. However, little is known about the involvement of histone posttranslational modifications, a crucial epigenetic mechanism in embryonic neurogenesis that regulates fate commitment and neuronal differentiation. During embryonic development, the repressive modification trimethylation of histone H3 on lysine 9 (H3K9me3) contributes to the cellular identity of different cell-types. However, the role of this modification and its H3K9 methyltransferases has not been elucidated in adult hippocampal neurogenesis. We determined that during the stages of neurogenesis in the adult mouse dentate gyrus and in cultured adult hippocampal progenitors (AHPs), there was a dynamic change in the expression and distribution of H3K9me3, being enriched at early stages of the neurogenic process. A similar pattern was observed in the hippocampus for the dimethylation of histone H3 on lysine 9 (H3K9me2), another repressive modification. Among H3K9 methyltransferases, the enzymes Suv39h1 and Suv39h2 exhibited high levels of expression at early stages of neurogenesis and their expression decreased upon differentiation. Pharmacological inhibition of these enzymes by chaetocin in AHPs reduced H3K9me3 and concomitantly decreased neuronal differentiation while increasing proliferation. Moreover, Suv39h1 and Suv39h2 knockdown in newborn cells of the adult mouse dentate gyrus by retrovirus-mediated RNA interference impaired neuronal differentiation of progenitor cells. Our results indicate that H3K9me3 and H3K9 methyltransferases Suv39h1 and Suv39h2 are critically involved in the regulation of adult hippocampal neurogenesis by controlling the differentiation of neural progenitor cells.
Identification of biomarkers for disease severity in nasopharyngeal secretions of infants with upper or lower respiratory tract viral infections
(Oxford University Press, 2022-10) Bertrand, Pablo J.; Vázquez, Yaneisi; Beckhaus, Andrea A.; González, Liliana A.; Contreras, Ana María; Ferres, Marcela; Padilla, Oslando; Riedel, Claudia A.; Kalergis, Alexis M.; Bueno, Susan M.
Lower respiratory tract infections (LRTIs) produced by viruses are the most frequent cause of morbidity and mortality in children younger than 5 years of age. The immune response triggered by viral infection can induce a strong inflammation in the airways and cytokines could be considered as biomarkers for disease severity as these molecules modulate the inflammatory response that defines the outcome of patients. Aiming to predict the severity of disease during respiratory tract infections, we conducted a 1-year follow-up observational study in infants who presented upper or lower respiratory tract infections caused by seasonal respiratory viruses. At the time of enrollment, nasopharyngeal swabs (NPS) were obtained from infants to measure mRNA expression and protein levels of IL-3, IL-8, IL-33, and thymic stromal lymphopoietin. While all cytokines significantly increased their protein levels in infants with upper and lower respiratory tract infections as compared to control infants, IL-33 and IL-8 showed a significant increase in respiratory syncytial virus (RSV)-infected patients with LRTI as compared to patients with upper respiratory tract infection. We also found higher viral loads of RSV-positive samples with a greater IL-8 response at the beginning of the symptoms. Data obtained in this study suggest that both IL-8 and IL-33 could be used as biomarkers for clinical severity for infants suffering from LRTIs caused by the RSV. © 2022 The Author(s). Published by Oxford University Press on behalf of the British Society for Immunology. All rights reserved.
Is Terzan 5 the remnant of a building block of the Galactic bulge? Evidence from APOGEE
(Oxford University Press, 2022-07-01) Taylor, Dominic J.; Mason, Andrew C.; Schiavon, Ricardo P.; Horta, Danny; Nataf, David M.; Geisler, Doug; Kisku, Shobhit; Phillips, Siân G.; Cohen, Roger E.; Fernández Trincado, José G.; Beers, Timothy C.; Bizyaev, Dmitry; García Hernández, Domingo Aníbal; Lane, Richard R.; Longa Peña, Penélope; Minniti, Dante; Muñoz, Cesar; Pan, Kaike; Villanova, Sandro
It has been proposed that the globular cluster-like system Terzan 5 is the surviving remnant of a primordial building block of the Milky Way bulge, mainly due to the age/metallicity spread and the distribution of its stars in the α-Fe plane. We employ Sloan Digital Sky Survey data from the Apache Point Observatory Galactic Evolution Experiment to test this hypothesis. Adopting a random sampling technique, we contrast the abundances of 10 elements in Terzan 5 stars with those of their bulge field counterparts with comparable atmospheric parameters, finding that they differ at statistically significant levels. Abundances between the two groups differ by more than 1σ in Ca, Mn, C, O, and Al, and more than 2σ in Si and Mg. Terzan 5 stars have lower [α/Fe] and higher [Mn/Fe] than their bulge counterparts. Given those differences, we conclude that Terzan 5 is not the remnant of a major building block of the bulge. We also estimate the stellar mass of the Terzan 5 progenitor based on predictions by the Evolution and Assembly of GaLaxies and their Environments suite of cosmological numerical simulations, concluding that it may have been as low as ∼3 × 108 M⊙ so that it was likely unable to significantly influence the mean chemistry of the bulge/inner disc, which is significantly more massive (∼1010 M⊙). We briefly discuss existing scenarios for the nature of Terzan 5 and propose an observational test that may help elucidate its origin. © 2022 The Author(s) Published by Oxford University Press on behalf of Royal Astronomical Society.
Isolation and Identification of Staphylococcus Species Obtained from Healthy Companion Animals and Humans
(MDPI, 2022-02) Thomson, P.; García, P.; Miles, J.; Isla, D.; Yáñez, C.; Santibáñez, R.; Núñez, A.; Flores-Yáñez, C.; Del Río, C.; Cuadra, F.
The close contact between people and their pets has generated the exchange of skin micro-biota, accompanied by bacteria that present resistance to antibiotics. Staphylococcus spp., opportunistic pathogens present in the skin and mucosa of mammals, have had their importance recognized in human and veterinary medicine. The objectives of this study were to identify Staphylococcus spp. present in isolates from the nostrils of healthy humans, dogs and cats as well as to determine their phenotype of resistance to methicillin. Strain identification was performed by MALDI-TOF mass spectrometry and antimicrobial susceptibility was determined using a disk diffusion assay for 12 antibiotics. Sixty humans (veterinary and technicians), sixty dogs and sixty cats were sampled; of them, 61.6%, 56.6% and 46.6%, respectively, carried Staphylococcus spp. in their nostrils, and only two people carried two different species of Staphylococcus in the only anatomical site sampled. A methicillin-resistant phenotype was present in 48.7% of the humans, 26.5% of the dogs and 57.1% of the cats, and sampled. These results demonstrate the presence of Staphylococcus spp. strains resistant to methicillin in personnel who work in contact with animals, as well as in dogs and cats that entered the same hospital or veterinary clinic, which alerts us to the potential transfer of these strains to or between people, dogs and/or cats.
Lipopolysaccharide from Porphyromonas gingivalis, but Not from Porphyromonas endodontalis, Induces Macrophage M1 Profile
(MDPI, 2022-09) Veloso, Pablo; Fernández, Alejandra; Astorga, Jessica; González Quintanilla, David; Castro, Alfredo; Escobar, Alejandro; Hoare, Anilei; Hernández, Marcela
Apical Lesions of Endodontic Origin (ALEO) are initiated by polymicrobial endodontic canal infection. Porphyromonas gingivalis (Pg) and Porphyromonas endodontalis (Pe) lipopolysaccharides (LPS) can induce a pro-inflammatory macrophage response through their recognition by TLR2 and TLR4. However, polarization responses induced by Pg and/or Pe LPS in macrophages are not fully understood. We aimed to characterize the polarization profiles of macrophages differentiated from THP-1 cells following Pg and/or Pe LPS stimulation from reference strain and clinical isolates. A modified LPS purification protocol was implemented and the electrophoretic LPS profiles were characterized. THP-1 human monocytes differentiated to macrophages were stimulated with Pg and Pe LPS. Polarization profiles were characterized through cell surface markers and secreted cytokines levels after 24 h of stimulation. TLR2 and TLR4 cell surfaces and transcriptional levels were determined after 24 or 2 h of LPS stimulation, respectively. LPS from Pg induced a predominant M1 profile in macrophages evidenced by changes in the expression of the surface marker CD64 and pro-inflammatory cytokine profiles, TNF-α, IL-1β, IL-6, and IL-12. Pe LPS was unable to induce a significant response. TLR2 and TLR4 expressions were neither modified by Pg or Pe LPS. Pg LPS, but not Pe LPS, induced a macrophage M1 Profile. © 2022 by the authors.
Machine learning applied in maternal and fetal health: a narrative review focused on pregnancy diseases and complications
(Frontiers Media S.A., 2023) Mennickent, Daniela; Rodríguez, Andrés; Opazo, Ma. Cecilia; Riedel, Claudia A.; Castro, Erica; Eriz-Salinas, Alma; Appel-Rubio, Javiera; Aguayo, Claudio; Damiano, Alicia E.; Guzmán-Gutiérrez, Enrique; Araya, Juan
Introduction: Machine learning (ML) corresponds to a wide variety of methods that use mathematics, statistics and computational science to learn from multiple variables simultaneously. By means of pattern recognition, ML methods are able to find hidden correlations and accomplish accurate predictions regarding different conditions. ML has been successfully used to solve varied problems in different areas of science, such as psychology, economics, biology and chemistry. Therefore, we wondered how far it has penetrated into the field of obstetrics and gynecology. Aim: To describe the state of art regarding the use of ML in the context of pregnancy diseases and complications. Methodology: Publications were searched in PubMed, Web of Science and Google Scholar. Seven subjects of interest were considered: gestational diabetes mellitus, preeclampsia, perinatal death, spontaneous abortion, preterm birth, cesarean section, and fetal malformations. Current state: ML has been widely applied in all the included subjects. Its uses are varied, the most common being the prediction of perinatal disorders. Other ML applications include (but are not restricted to) biomarker discovery, risk estimation, correlation assessment, pharmacological treatment prediction, drug screening, data acquisition and data extraction. Most of the reviewed articles were published in the last five years. The most employed ML methods in the field are non-linear. Except for logistic regression, linear methods are rarely used. Future challenges: To improve data recording, storage and update in medical and research settings from different realities. To develop more accurate and understandable ML models using data from cutting-edge instruments. To carry out validation and impact analysis studies of currently existing high-accuracy ML models. Conclusion: The use of ML in pregnancy diseases and complications is quite recent, and has increased over the last few years. The applications are varied and point not only to the diagnosis, but also to the management, treatment, and pathophysiological understanding of perinatal alterations. Facing the challenges that come with working with different types of data, the handling of increasingly large amounts of information, the development of emerging technologies, and the need of translational studies, it is expected that the use of ML continue growing in the field of obstetrics and gynecology. Copyright © 2023 Mennickent, Rodríguez, Opazo, Riedel, Castro, Eriz-Salinas, Appel-Rubio, Aguayo, Damiano, Guzmán-Gutiérrez and Araya.
Osteoconductive Effect of a Nanocomposite Membrane Treated with UV Radiation
(MDPI, 2022-01) Olguín, Yusser; Acuna-Mendoza, Soledad; Otero, Carolina; Acevedo, Cristian A.; Covarrubias, Cristian
Modulation of the bio-regenerative characteristics of materials is an indispensable re-quirement in tissue engineering. Particularly, in bone tissue engineering, the promotion of the osteoconductive phenomenon determines the elemental property of a material be used therapeuti-cally. In addition to the chemical qualities of the constituent materials, the three-dimensional surface structure plays a fundamental role that various methods are expected to modulate in a number of ways, one most promising of which is the use of different types of radiation. In the present manuscript, we demonstrate in a calvarial defect model, that treatment with ultraviolet irradiation allows modification of the osteoconductive characteristics in a biomaterial formed by gelatin and chitosan, together with the inclusion of hydroxyapatite and titanium oxide nanoparticles. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.
Quantum mutual information, fragile systems and emergence
(MDPI, 2022-11) Navarrete, Yasmín; Davis, Sergio
In this paper, we present an analytical description of emergence from the density matrix framework as a state of knowledge of the system, and its generalized probability formulation. This description is based on the idea of fragile systems, wherein the observer modifies the system by the measurement (i.e., the observer effect) in order to detect possible emergent behavior. We propose the use of a descriptor, based on quantum mutual information, to calculate if subsystems of systems have inner correlations. This may contribute to a definition of emergent systems in terms of emergent information.
Reduced microbial diversity of the nasopharyngeal microbiome in household contacts with latent tuberculosis infection
(Nature Research, 2023-12) Ruiz-Tagle, Cinthya; Ugalde, Juan A.; Naves, Rodrigo; Araos, Rafael; García, Patricia; Balcells, María Elvira
The upper respiratory tract is an obliged pathway for respiratory pathogens and a healthy microbiota may support the host's mucosal immunity preventing infection. We analyzed the nasopharyngeal microbiome in tuberculosis household contacts (HHCs) and its association with latent tuberculosis infection (TBI). A prospective cohort of HHCs was established and latent TBI status was assessed by serial interferon-γ release assay (IGRA). Nasopharyngeal swabs collected at baseline were processed for 16S rRNA gene sequencing. The 82 participants included in the analysis were classified as: (a) non-TBI [IGRA negative at baseline and follow-up, no active TB (n = 31)], (b) pre-TBI [IGRA negative at baseline but converted to IGRA positive or developed active TB at follow-up (n = 16)], and (c) TBI [IGRA positive at enrollment (n = 35)]. Predominant phyla were Actinobacteriota, Proteobacteria, Firmicutes and Bacteroidota. TBI group had a lower alpha diversity compared to non-TBI (padj = 0.04) and pre-TBI (padj = 0.04). Only TBI and non-TBI had beta diversity differences (padj = 0.035). Core microbiomes’ had unique genera, and genus showed differential abundance among groups. HHCs with established latent TBI showed reduced nasopharyngeal microbial diversity with distinctive taxonomical composition. Whether a pre-existing microbiome feature favors, are a consequence, or protects against Mycobacterium tuberculosis needs further investigation. © 2023, The Author(s).
The globular cluster VVV CL002 falling down to the hazardous Galactic centre
(EDP Sciences, 2024-03-01) Minniti, Dante; Matsunaga, Noriyuki; Fernández-Trincado, José G.; Otsubo, Shogo; Sarugaku, Yuki; Takeuchi, Tomomi; Katoh, Haruki; Hamano, Satoshi; Ikeda, Yuji; Kawakita, Hideyo; Lucas, Philip W.; Smith, Leigh C.
Context. The Galactic centre is hazardous for stellar clusters because of the strong tidal force in action there. It is believed that many clusters were destroyed there and contributed stars to the crowded stellar field of the bulge and the nuclear stellar cluster. However, the development of a realistic model to predict the long-term evolution of the complex inner Galaxy has proven difficult, and observations of surviving clusters in the central region would provide crucial insights into destruction processes. Aims. Among the known Galactic globular clusters, VVV CL002 is the closest to the centre, at 0.4 kpc, but has a very high transverse velocity of 400 km s-1. The nature of this cluster and its impact on Galactic astronomy need to be addressed with spectroscopic follow up. Methods. Here we report the first measurements of its radial velocity and chemical abundance based on near-infrared high-resolution spectroscopy. Results. We find that this cluster has a counter-rotating orbit constrained within 1.0 kpc of the centre, and as close as 0.2 kpc at the perigalacticon, confirming that the cluster is not a passerby from the halo but a genuine survivor enduring the harsh conditions of the tidal forces of the Galactic mill. In addition, its metallicity and α abundance ([α/Fe] ≃ +0.4 and [Fe/H] = -0.54) are similar to those of some globular clusters in the bulge. Recent studies suggest that stars with such α-enhanced stars were more common at 3- 6 kpc from the centre around 10 Gyr ago. Conclusions. We infer that VVV CL002 was formed outside but is currently falling down to the centre, showcasing a real-time event that must have occurred to many clusters a long time ago.

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